| Publications
1. R. L. Anderson,
and D. P. Allison, (1965). “Purification and Characterization
of D-lyxose Isomerase,” J. Biol. Chem. 240, 2367-72.
2. M. Y. Kamel,
D. P. Allison, and R. L. Anderson, (1966). “Stereospecific
D-glucokinase of Aerobacter aerogenes,” J. Biol. Chem. 241,
690-4.
3. A. Cohen, D. P. Allison,
H. I. Adler, R. Curtiss, and III, (1967). “Genetic Transfer
to Minicells of Escherichia coli K-12,” Genetics 56, 550-1.
4. R. Curtiss, III, L. G. Caro,
D. P. Allison, and D. R. Stallions, (1969). “Early Stages
of Conjugation in Escherichia coli,” J. Bacteriol. 100, 1091-104.
5. D. P. Allison, (1971). “Giant
cells of Escherichia coli: A Morphological Study,” J. Bacteriol.
108, 1390-401.
6. N. K. Notani, J. K. Setlow,
V. R. Joshi, and D. P. Allison, (1972). “Molecular Basis for
the Transformation Defects in Mutants of Haemophilus influenzae,”
J. Bacteriol. 110, 1171-80.
7. M. E. Boling, J. K. Setlow,
and D. P. Allison, (1972). “Bacteriophage of Haemophilus influenzae.
I. Differences Between Infection by Whole Phage//Extracted Phage
DNA and Prophage DNA Extracted from Lysogenic Cells.,” J.
Mol. Biol. 63, 335-48.
8. R. C. Krueger, and D. P. Allison,
(1973). “Further Studies on a Compact Form of Salt Soluble
Deoxyribonucleoprotein,” Biochim. Biophys. Acta 312, 259-66.
9. R. J. Sheehy, A. Perry, D.
P. Allison, R. Curtiss, and III, (1973). “Molecular Nature
of R-factor DNA Isolated from Salmonella typhimurium minicells,”
J. Bacteriol. 114, 1328-35.
10. M. A. Handel, J. Papaconstantinou,
D. P. Allison, E. M. Julk, and E. T. Chin, (1973). “Synthesis
of Mitochondrial DNA in Spermatocytes of Rhynchosciara Hollaenderi,”
Develop. Biol. 35, 240-9.
11. J. K. Setlow, M. E. Boling,
D. P. Allison, and K. L. Beattie, (1973). “The Relationship
Between Prophage Induction and Transformation in Haemophilus influenzae,”
J. Bacteriol. 115, 153-61.
12. M. E. Boling, D. P. Allison,
and J. K. Setlow, (1973). “Bacteriophage of Haemophilus influenzae
III. Morphology//Deoxyribonucleic Acid Homology//and Immunity Properties
of HPlcl//S2 and the Defective Phage from Strain Rd,” J. Virol.
11, 585-91.
13. N. K. Notani, J. K. Setlow,
and D. P. Allison, (1973). “Intracellular Events During Infection
by Haemophilus influenzae Phage and Transfection of its DNA,”
J. Mol. Biol. 75, 581-99.
14. R. J. Sheehy, D. P. Allison,
R. Curtiss, and III, (1973). “Cryptic Plasmids in a Minicell-Producing
Strain of Salmonella typhimurium,” J. Bacteriol. 114, 439-42.
15. R. S. Stafford, D. P. Allison,
and R. O. Rahn, (1975). “Detection by Electron Microscopy
of Photo-Induced Denaturation in DNA,” Nucleic Acids Research
2, 143-8.
16. B. Sedgwick, J. K. Setlow,
M. E. Boling, and D. P. Allison, (1975). “Minicell Production
and Superinducibility of Thymidine Requiring Strains of Haemophilus
Influenzae,” J. Bacteriol. 123, 1208-17.
17. R. K. Fujimura, and D. P.
Allison, (1976). “Electron Micrographs of Nicked DNA Replicated
by T5 DNA Polymerase,” J. Biol. Chem. 251, 2174-5.
18. D. P. Allison, A. T. Ganesan,
A. C. Olson, C. M. Snyder, and S. Mitra, (1977). “Electron
Microscopic Studies of M13 Bacteriophage DNA Replication,”
J. Virol. 24, 673-84.
19. S. Dasgupta, D. P. Allison,
C. E. Snyder, and S. Mitra, (1977). “Base Unpaired Regions
in Supercoiled Replicative-form DNA of Coliphage M13,” J.
Biol. Chem. 252, 5916-23.
20. W. E. Masker, N. B. Kuemmerle,
and D. P. Allison, (1978). “In vitro Packaging of Bacteriophage
T7 DNA Synthesized in vitro,” J. Virol. 27, 149-63.
21. S. J. Kennel, F. Tsakeres,
P. A. Kelly, and D. P. Allison, (1978). “Defective C-type
Retrovirus Particles Secreted by L 1210 Leukemia Cells,” Cancer
Res. 38, 4574-9.
22. F. H. Gaertner, A. Vitto,
D. P. Allison, K. W. Cole, and G. E. Spady, (1979). “The AROM
Enzyme Connugate of Neurospora: Multiple Proteases and Subunit Artifacts,”.
Fogerty International Conference on Limited Proteolysis in Microorganisms.
Georges N. Cohen and Helmut Holzer, Eds. U.S. Department of Health
Education and Welfare, DHEW Publication No. (NIH) 79-1591, 1978.
23. G. C. Das, D. P. Allison,
and S. K. Niyogi, (1979). “Sites Including Those of Origin
and Termination of Replication are not Freely Available to Single-cut
Restriction Endonucleases in Supercompact Form of Simian Virus 40
Minichromosome,” Biochem. Biophys. Res. Commun. 89, 17-25.
24. G. Morelli, C. Fisseau, B.
Behrens, T. A. Trautner, J. Luh, S. W. Ratcliff, D. P. Allison,
and A. T. Ganesan, (1979). “The Genome of B. Subtilis Phage
SPP1: The Topology of DNA Molecules,” J. Mol. Gen. Genet.
168, 153-64.
25. N. C. Sun, C. R. Y. Sun, D.
P. Allison, R. W. Tennant, L. Chao, and A. W. Hsie, (1980). “Argininosuccinate
Synthetase as a Marker of Transformed Syrian Hamster Epidermal Cells,”
Exp. Cell Res. 127, 460-5.
26. D. R. Miller, K. M. Hamby,
D. P. Allison, S. M. Fischer, and T. J. Slaga, (1980). “The
Maintenance of a Differentiated State in Cultured Mouse Epidermal
Cells,” Exp. Cell Res. 129, 63-71.
27. A. N. Best, D. P. Allison,
and G. D. Novelli, (1981). “Purification of Supercoiled DNA
of Plasmid col E1 by RPC-5 Chromatography,” Anal. Biochem.
114, 235-43.
28. M. E. LaMarca, D. P. Allison,
C. A. Chambers, and D. M. Skinner, (1981). “Denaturation Mapping
of a Complex Satellite DNA by UV Irradiation,” J. Biol. Chem.
256, 6475-9.
29. R. K. Fujimura, S. K. Das,
D. P. Allison, and S. K. Niyogi, (1982). “Conversion of Simian
Virus 40 DNA to Ordered Nucleoprotein Structures by Extracts that
Direct Accurate Initiation of Eukaryotic RNA Polymerase II,”
Nucleic Acids Research 10, 5552-3.
30. S. N. Sinha, R. J. Hellwig,
D. P. Allison, and S. K. Niyogi, (1982). “Conversion of Simian
Virus 40 DNA to Ordered Nucleoprotein Structures by Extracts that
Direct Accurate Initiation of Eukaryotic RNA Polymerase II,”
Nucleic Acids Research 10, 5553-62.
31. E. Archibald, J. Wilson, D.
P. Allison, and R. J. Sheehy, (1983). “Isolation of Membrane
Bound Fractions of R-68 Plasmid DNA in E. coli,” J. Bacteriol
156, 414-8.
32. P. T. Banerjee, W. H. Olson,
D. P. Allison, R. C. Bates, C. E. Snyder, and S. Mitra, (1983).
“Electron Microscopic Comparison of the Sequences of Single-Stranded
Genomes of Mammalian Parvoviruses by Heteroduplex Mapping,”
J. Mol. Biol. 166, 257-72.
33. M. C. Rorvik, J. C. Pelling,
D. P. Allison, and T. J. Slaga, (1986). “The Intracellular
Fate of [3H]benzo[a]pyrene Diol Epoxide Diastereomers Localized
in vivo in Sencar Mouse Epidermis: A Quantitative Electron Microscopic
Study,” Carcinogenesis 7, 345-52.
34. D. P. Allison, C. S. Daw,
and M. C. Rorvik, (1987). “The Construction and Operation
of a Simple Inexpensive Slam Freezing Device for Electron Microscopy,”
J. Microscopy 147, 103-8.
35. S. J. Kennel, J. A. Hotchkiss,
M. C. Rorvik, D. P. Allison, and L. J. Foote, (1987). “Rat
Monoclonal Antibodies to Mouse Lung Components for Analysis of Fibrosis,”
Exp. Mol. Path. 47, 110-24.
36. M. C. Rorvik, D. P. Allison,
J. A. Hotchkiss, H. P. Witschi, and S. J. Kennel, (1988). “Antibodies
to Mouse Lung Capillary Endothelium,” J. Histochem. Cytochem.
36, 741-9.
37. J. Woodward, M. Reeves, D.
Allison, and E. Greenbaum, (1988). “The Effect of Exogenously
Added Manganese Chloride on the Operational Stability of the Chloroplast-ferredoxin-hydrogenase
System,” Enzyme and Microbial Technology 10, 123-8.
38. A. L. Olins, B. A. Moyer,
S. H. Kim, and D. P. Allison, (1989). “Synthesis of a More
Stable Osmium Ammine Electron-dense DNA Stain,” J. Histochem.
Cytochem. 37, 395-8
39. S.-H. Kim, B. A. Moyer, S.
Azan, G. M. Brown, Ada L. Olins, and D. P. Allison, (1989). “Preparation
and Properties of the Nitrido-Bridged Osmium(IV) Binuclear Complexes
[OsIV2N(NH3)10-nCln]Cl5-n (n = 2, 3),” Inorganic Chemistry
28, 4648-50.
40. D. P. Allison, J. R. Thompson,
K. B. Jacobson, R. J. Warmack, and T. L. Ferrell, (1990). “Scanning
tunneling microscopy and spectroscopy of plasmid DNA,” Scanning
Microsc. 4(3), 517-22.
41. J. G. Mantovani, D. P. Allison,
R. J. Warmack, T. L. Ferrell, J. R. Ford, R. E. Manos, J. R. Thompson,
B. B. Reddick, and K. B. Jacobson, (1990). “Scanning Tunneling
Microscopy of Tobacco Mosaic Virus: On Evaporated and Sputter Coated
Palladium/Gold Substrates,” J. Microscopy 158, 109-16.
42. G. M. Brown, D. P. Allison,
R. J. Warmack, B. K. Jacobson, F. W. Larimer, R. P. Woychik, and
W. L. Carrier, (1991). “Electrochemically induced adsorption
of radio-labeled DNA on gold and HOPG substrates for STM investigations,”
Ultramicroscopy 38(3-4), 253-64.
43. D. R. Miller, D. P. Allison,
M. C. Rorvik, and T. J. Slaga, (1991). “Inhibited Morphological
Terminal Differentiation and Enhanced Proliferation of Cultured
Mouse Epidermal Cells at Different Concentrations of Dimethyl Sulphoxide,”
Cell Prolif. 24, 191-210.
44. L. A. Bottomley, J. N. Haseltine,
D. P. Allison, R. J. Warmack, T. Thundat, R. A. Sachleben, G. M.
Brown, R. P. Woychik, K. B. Jacobson, and T. L. Ferrell, (1992).
“Scanning tunneling microscopy of DNA: The chemical modification
of gold surfaces for immobilization of DNA,” J. Vac. Sci.
Technol. A 10(4, pt.1), 591-5.
45. T. Thundat, R. J. Warmack,
D. P. Allison, L. A. Bottomley, A. J. Lourenco, and T. L. Ferrell,
(1992). “Atomic force microscopy of deoxyribonucleic acid
strands adsorbed on mica: The effect of humidity on apparent width
and image contrast,” J. Vac. Sci. Technol. A 10(4, pt.1),
630-5.
46. D. P. Allison, R. J. Warmack,
L. A. Bottomley, T. Thundat, G. M. Brown, R. P. Woychik, J. J. Schrick,
K. Bruce Jacobson, and T. L. Ferrell, (1992). “Scanning tunneling
microscopy of DNA: A novel technique using radiolabeled DNA to evaluate
chemically mediated attachment of DNA to surfaces,” Ultramicroscopy
42-44, 1088-94.
47. T. Thundat, D. P. Allison,
R. J. Warmack, and T. L. Ferrell, (1992). “Imaging isolated
strands of DNA molecules by atomic force microscopy,” Ultramicroscopy
42-44(PART A-B), 1101-6.
48. T. Thundat, R. J. Warmack,
D. P. Allison, and T. L. Ferrell, (1992). “Electrostatic spraying
of DNA molecules for investigation by scanning tunneling microscopy,”
Ultramicroscopy 42-44, 1083-7.
49. T. Thundat, D. P. Allison,
R. J. Warmack, G. M. Brown, K. B. Jacobson, J. J. Schrick, and T.
L. Ferrell, (1992). “Atomic force microscopy of DNA on mica
and chemically modified mica,” Scanning Microsc. 6(4), 911-8.
50. T. Thundat, X.-Y. Zheng, S.
L. Sharp, D. P. Allison, R. J. Warmack, D. C. Joy, and T. L. Ferrell,
(1992). “Calibration of atomic force microscope tips using
biomolecules,” Scanning Microsc. 6(4), 903-10.
51. D. P. Allison, L. A. Bottomley,
T. Thundat, G. M. Brown, R. P. Woychik, J. J. Schrick, K. B. Jacobson,
and R. J. Warmack, (1992). “Immobilization of Deoxyribonucleic
Acid for Scanning Probe Microscopy,” Proc. Natl. Acad. Sci.
89, 10129-33.
52. G. M. Brown, T. Thundat, D.
P. Allison, and R. J. Warmack, (1992). “Electrochemical and
In Situ AFM-STM Investigations of Titanium in Oxalic Acid Solution,”
J. Vac. Sci. and Tech. A 10(4), 3001-6.
53. T. Thundat, R. J. Warmack,
D. P. Allison, A. J. Lourenco, T. L. Ferrell, and L. A. Bottomley,
(1992). “Atomic Force Microscopy of DNA Strands Adsorbed on
Mica: The Effect of Humidity on Apparent Width and Image Contrast,”
J. Vac. Sci. Technol. A 10(4), 630-5.
54. D. P. Allison, T. Thundat,
K. B. Jacobson, L. A. Bottomley, and R. J. Warmack, (1993). “Imaging
entire genetically functional DNA molecules with the scanning tunneling
microscope,” J. Vac. Sci. Technol. A 11(4), 816-19.
55. T. Thundat, D. P. Allison,
R. J. Warmack, M. J. Doktycz, K. B. Jacobsen, and G. M. Brown, (1993).
“Atomic force microscopy of single- and double-stranded deoxyribonucleic
acid,” J. Vac. Sci. Technol. A 11(4), 824-8.
56. D. P. Allison, M. J. Doktycz,
T. Thundat, K. B. Jacobson, G. M. Brown, and R. J. Warmack, (1993).
“Scanning Probe Microscopy of Immobilized DNA,” Polymer
Preprints 34(2), 332-33.
57. L. A. Bottomley, J. A. Jones,
Y. Ding, D. P. Allison, T. Thundat, and R. J. Warmack, (1993). “Scanning
Tunneling Microscopic Imaging of Electrostatically Immobilized Nucleic
Acids. The Influence of Self-Assembled Monolayered Structure on
the Binding of Plasmid DNA to Gold Surfaces,” SPIE 1891, 48-55.
58. I. Lee, T. Thundat, R. J.
Warmack, D. P. Allison, T. L. Ferrell, L. Tkachuk, and G. D. Griffin,
(1993). “Atomic Force Microscopy and Photon Scanning Tunneling
Microscopy of Liposomes and Filtration Membrane,” Bull. Am.
Phys. Soc. 38(1), 118.
59. T. Thundat, X. Y. Zheng, D.
P. Allison, and R. J. Warmack, (1993). “Role of Relative Humidity
in Atomic Force Microscopy Imaging,” Surf. Sci. Lett. 294,
939-43.
60. T. Thundat, R. J. Warmack,
D. P. Allison, M. J. Doktycz, and K. B. Jacobson, (1993). “Atomic
Force Microscopy of Single-Stranded and Double-Stranded DNA Adsorbed
on Chemically Treated Mica,” Bull. Am. Phys. Soc. 38(1), 118.
61. D. P. Allison, (1993). “Scanning
Tunneling Microscopy of DNA Chemically Attached to Gold Surfaces,”
Bull. Am. Phys. Soc. 38(1), 51.
62. T. Thundat, B. C. Sales, B.
C. Chakoumakos, L. A. Boatner, D. P. Allison, and R. J. Warmack,
(1993). “Atomic Layer-By-Layer Surface Removal by Force Microscopy,”
Surf. Sci. Lett. 293, L863-9.
63 T. Thundat, D. P. Allison,
and R. J. Warmack, (1994). “Stretched DNA structures observed
with atomic force microscopy,” Nucleic Acids Research 22(20),
4224-8.
64. T. Thundat, R. J. Warmack,
G. Y. Chen, and D. P. Allison, (1994). “Thermal and Ambient-Induced
Deflections of Scanning Force Microscope Cantilevers,” Appl.
Phys. Lett. 64, 2894-96.
65. G. Y. Chen, R. J. Warmack,
T. Thundat, D. P. Allison, and A. Huang, (1994). “Resonance
Response of Scanning Force Microscopy Cantilevers,” Rev. Sci.
Instrum. 65(8), 2532-37.
66. R. J. Warmack, X.-Y. Zheng,
T. Thundat, and D. P. Allison, (1994). “Friction Effects in
Atomic Force Microscopy,” Rev. Sci. Instrum. 65(2), 394-99.
67. T. Thundat, R. J. Warmack,
D. P. Allison, and K. B. Jacobson, (1994). “Critical Point
Mounting of Kinetoplast DNA,” Scanning Microsc. 8, 23-30.
68. D. P. Allison, (1994). “STM
and SFM in Biology (Book Review),” Phys. Today ( July),
69. T. Thundat, G. Y. Chen, R.
J. Warmack, D. P. Allison, and E. A. Wachter, (1995). “Vapor
Detection Using Resonating Microcantilevers,” Anal. Chem.
67(3), 519-21.
70. I. Lee, J. W. Lee, R. J. Warmack,
D. P. Allison, and E. Greenbaum, (1995). “Molecular Electronics
of a Single Photosystem I Reactor Center: Studies with Scanning
Tunneling Microscopy and Spectroscopy,” Proc. Natl. Acad.
Sci. 92, 1965-69.
71. D. P. Allison, T. Thundat,
P. Modrich, R. J. Isfort, M. J. Doktycz, P. S. Kerper,
and R. J. Warmack, (1995). "Mapping Site-specific Endonuclease
Binding to DNA by Direct Imaging with Atomic Force Microscopy,"
SPIE 2386, 24-29.
72. X.-Y. Zheng, Y. Ding, L. A.
Bottomley, D. P. Allison, and R. J. Warmack, (1995). “Discontinous
Gold Island Films on Mica,” J. Vac. Sci. Technol. B 13(3),
1320-24.
73. D. P. Allison, P. S. Kerper,
M. J. Doktycz, J. A. Spain, P. Modrich, F. W. Larimer, T. Thundat,
and R. J. Warmack, (1996). “Direct Atomic-Force Microscope
Imaging of EcoRI Endonuclease,” Proc. Natl. Acad. Sci. 93(17),
8826-9.
74. D. P. Allison, P. S. Kerper,
M. J. Doktycz, T. Thundat, P. Modrich, F. W.
Larimer,D. K. Johnson, P. R. Hoyt, M. L. Mucenski, and R. J. Warmack,
(1997). “Mapping Individual Cosmid DNAs by Direct AFM Imaging,”
Genomics 41(3), 379-84.
75. D. P. Allison, M. J. Doktycz,
P. R. Hoyt, T. Thundat, and R. J. Warmack (1997)
“The analysis of genomes by atomic force microscopy, Scanning
19, 136-37.
76. P. R. Hoyt, M. J. Doktycz,
P. Modrich, R. J. Warmack, and D. P. Allison, (2000).
“ Identifying Sequence Similarities Between DNA Molecules,”
Ultramicroscopy 82, 237-44.
77. P.R. Hoyt, M. J. Doktycz,
R. J. Warmack, and D. P. Allison, (2001) “Spin column Isolation
of DNA-Protein Interactions from Complex Protein Mixtures for AFM
Imaging,” Ultramicroscopy, 86, 139-43.
78. D. P. Allison, P. Hinterdorfer,
and Wenhai Han, (2002). “Biomolecular Forc
Measurements and the Atomic Force Microscope” Current Opinion
in Biotechnology 13, 47-51.
79. Doktycz, M. J., Sullivan,
C. J., Hoyt, P. R., Pelletier, D. A., Wu, S.Allison, D. P. (2003)
“AFM imaging of bacteria in liquid media immobilized on gelatin
coated mica surfaces,” Ultramicroscopy, 97(1-4), 209-216.
80. Coffman, E. A., Melechko, A.
V., Allison, D. P., Simpson, M. L., Doktycz, M. J. (2004) “Surface
patterning of silica nanostructures using bio-inspired templates
and directed synthesis,” Langmuir, 20, 8431-8436.
81. Sullivan, C. J., Morrell,
J. L., Allison, D. P., Doktycz, M. J. (2005) “Mounting of
Escherichia Coli Spheroplasts for AFM Imaging,” Ultramicroscopy,
in press.
Book
chapters
1. D. P. Allison,
T. Thundat, and R. J. Warmack, (1997) “Scanning Probe Microscopy
in Genomic Research,” in Automated Technologies for Genome
Characterization, T. J. Beugelsdijk, ed., John Wiley and Sons, Inc.
167-188.
2. D. P. Allison,
(1983). “Preparation of Deoxyribonucleic Acid (DNA) for Electron
Microscopy,” Electron Microscopy, B. R. Jones, ed., Library
Research Assoc., Monroe, New York, 389-406.
3. D. P. Allison,
L. A. Bottomley, R. J. Warmack, and T. Thundat, (1996). “Spreading
and Immobilizing DNA on Au III,” Procedures in Scanning Probe
Microscopies, John Wiley and Sons, Ltd., Sussex, United Kingdom.
4. T. L. Ferrell,
D. P. Allison, T. Thundat, and R. J. Warmack, (1995). “Scanning
Tunneling Microscopy in Sequencing of DNA,” Molecular Biology
and Biotechnology: A Comprehensive Desk Reference, R. A. Meyers,
ed., VCH Publishers, Inc., New York, 851-3.
5. T. L. Ferrell,
D. P. Allison, T. Thundat, and R. J. Warmack, (1996). “Scanning
Probe Microscopy in Sequencing of DNA,” Encyclopedia of Molecular
Biology and Molecular medicine, vol 5, R. A. Meyers, ed., VCH Publishers,
Inc., New York, 401-10.
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